Each one of the three motor phase groups has two ends to it, so there are six wire ends to the phase groups. However, in order to run the wires from the inside of the motor to the outside to the controller (there are a few models of hubmotor that have the controller inside the motor housing, Stromer, A2B, Magic Pie), but most have the phase wires exit the motor near the axle.
Instead of having six wire ends exit the axle, you can use thicker wire if you terminate three of those six wire ends inside the motor, and only three need to exit. Electricity will only flow through a complete circuit, so it doesn't hurt to have three of the six phase group wire ends connected.
If you look, you can find one-phase motors, where all of the coils are energized and then de-energized at the same time. Not as smooth as multi-phase, but they can be run by a very simple controller. There are motors that have two phase groups, where it uses a simple one-phase controller, but the second group of motor phases are powered by a "delay" circuit. Crude, but works "OK" at a specific and constant RPM.
Falco bundles their motor phases in groups of five (5-phase), and theoretically it is smoother and slightly more efficient than 3-phase, but...you can only get controllers from Falco.
Fisher and Paykel makes a 7-phase motor, with a high pole-count (for washing machines, its popular to convert to a small wind-generator).
Three phase is smoother than one-phase, and simpler than 5-phase (or more). The biggest benefit is simply that 3-phase is so common, the parts are cheaper due to mass-production.