However, you may not want to charge the strings together anymore, because if you connect the balance leads and cells in one string are very different from those in another, it may cuase high current thru the leads trying to suddenly equalize that.
Another problem, if you *don't* parallel the balance leads during charging, is that any cells taht are low mean the other cells will be high by that amount, spread across them all by ratios of their internal resistances and other properties.
It isn't quite this simple, but an extreme example of a bad cell in such a string-built pack: if you have a 6s pack, all strings still paralleled at main +/- for charging, but not balance connectors not connected, then say for the one with the bad cell, the lowest cell is down at 2.5v and the rest at 3.7v. That's up to 1.2v to be distributed among the cells. If every cell gets .2v of that, it means the 5 cells will end up charging to 4.4v each (instead of 4.2v). The lowest cell won't fully charge, only reaching 3.2v. The 4.4v might not cause a problem this time around. (but it could).
Next time you charge it, let's say the difference in voltage is now 2v (because the disparity will get worse each time). The high cells will overcharge even more, while the low cell will undercharge even worse, while still resulting in the same total voltage across teh whole string. But now the overcharge could be enough to set the RC LiPo off, and there could be a fire. At best, it might just puff up all the previously-good cells in that string.
Let's say taht somehow you never manage to overcharge the good cells, but the other cell gets discharged down to empty well before the others do, and you keep riding because you don't know that's happened. If current continues to flow thru that now-empty cell, then it will begin to reverse-charge the cell. At best, it will puff it up and permanently damage it. At worst, it could burst into flame, lighting off the rest of the pack.
So...if you wire up the pack so balance wires are never connected between packs, and only main + / - is connected, then you must charge every pack separately, using it's balance connector to the charger, to rebalance them every time, to ensure the above scenario can't happen.
At least if you have balance wires always connected, then while you may drain down other paralleled cells to the bad one, you will probably never drain them down so far that they reach a dangerous point, as long as you monitor them in some way, even if it's just watching how much voltage sag you have under load as you get closer to empty, and stopping if it's really bad, to check the individual balance voltages.
If you simply charge each pack individually (and discharge them all in complete parallel), then you can see when you have bad cells because some of them are going to start out a bit low, and shoot up in voltage during the high-current phase of charging, becuase they have higher internal resistance (and lower capacity) than the rest. (similarly, if you run a discharge test on the pack, those same cells will drop in voltage faster than others under load). Then you know that pack is going to cause a problem, if not now, eventually. You can either stop using it or keep an eye on it, which ever you like.