A 700C wheel is the same size as a 29er wheel: both are 622-XX.
You could simply mount a 700C kit wheel and motor on the rear of your 29er and use your existing tire, IF the existing rim isn't too much wider than the new, motor rim. The other option would be to send your wheel to Justin at ebikes.ca and have him custom-lace a motor into your rim, OR order a kit from cell_man or whomever and take the motor and rim to the LBS of your choice and have it laced into your rim. Most competent wheel builders should be able to do it.
I've thought about doing this as well, though I don't have a 29er. The problem is the bracing for the brakes. Many bike frames (especially road frames) don't allow enough room between the rim and the brace for the larger circumference tires that a 29er uses.
I'm a newb. If you want better input from the experts on the forum, you MIGHT want to post pictures of your 29er, or the one you have in mind, brand, etc. That will give people more info to go from and you'll be more likely to get a response.
Best,
Tony