A long overdue reply on this thread ...
So, I ended up solving my battery problem by re-soldering one of the "cell sense" wires, and flipping it upside down went mounted in the bike (before the battery would lay on top of these small wires). Not sure if the flipping helped, or if it was simply this other wire which had a bad connection, or even something else, but since then, things work perfectly again, and I've logged an other 300-400 miles to the bike.
I also did the delta-wye modification to my hub motor, and I would say that for the hassle, it's not worth it (but something might be wrong in what I did). I'm only getting 3-5 mph increase (on load, of course, with no load, the wheel will spin at 65mph), but that results in a massive energy consumption increase (constant at 35A), and it also generates so much heat through the shunt inside the controller, that it melts the solder, and de-attaches the wire that goes to the CA ... making the CA read stupid values, and be useless for speed measurement.
As I still want to gain a few mph, I'm actually going to try a slightly faster winding hub.
Thanks to everyone who helped me getting this resolved.