Doc,
The capacity loss is most likely mostly due to an out of balance condition, and running them conservatively for a while should see some improvement. If you can, that's conservative on both ends, so it includes cutting off the charge before the top, since at the top some will be overcharged. If you know your consumption on each ride, and you know your charge current, then a timer cutoff for power to the charger works well for those extra conservative cycles. Definitely do not run them close to low for a while.
A key switch that includes all of your accessories is a good preventative solution too. If your house key is on the keyring with your bike key, it's harder to leave your bike on. Also making your ebike easier to charge so you plug it in for charging as soon as you get off the bike is good prevention too, since those accessories shouldn't draw much current and can't kill a full pack so quickly.