Since AFAICT the actual problem the OP has with the dropouts isn't the dropouts, but the orientation of the axle flat being parallel with the ground being a potential failure point due to bending loads there, I'd like to reference here an axle in a used *front* kit I got, which is very noticeably bent.
http://www.endless-sphere.com/forums/viewtopic.php?f=4&t=64279
However, since it was in a front dropout, it was *not* oriented horizontally, but rather nearly vertically. Unfortunately, as I never saw it on the bike itself, I don't know if the bend is forward or backward facing vs how it was mounted on the fork.
The bike itself was not crashed or damaged AFAICT from the single pic I saw of it with the motor mounted before the seller took it off, and the seller (whom I spoke with for a while when I picked it up) didn't have any damage on the bike to repair from any crash that could've bent this axle.
The motor is an old Crystalyte X5304 front 26", still in it's original spokes and rim AFAICT, and there is no significant damage to the rim either (which one would expect to result from something that bent the axle this badly).
So while I don't know *what* bent this axle, it most definitely *is* bent and in the direction of the axle flats, as opposed to the threaded area, so it does follow (probably) that the axle *is* weaker in this direction. (it is worth noting that I've been told the old X5xxx series stuff have weak axles in general)
However, there are no (visible) cracks in the axle at the interface between uncut section and flatted section, as of yet.
Even so, it is likely that when I use this motor (probably on CrazyBike2's rear) it will have it's axle replaced with as large a diameter hollow pipe axle as I can fit in it, clamped and pinned to horizontal "dropouts" made just for it.

I haven't found it yet, but Farfle made a hollow axle for something some time ago, and that's what this is to be based on.