Cool, Not too many EX3's still alive.
I'm not exactly sure how the charging BMS works, but I suspect if the voltage goes too high, you will suddenly lose regen as the BMS opens the circuit. With no batteries in the circuit, the regen voltage might go sky-high and fry something. As long as the batteries have been discharged a bit before using regen, it shouldn't be a problem.
Like Ypedal says, avoid regen at the beginning of a ride. My Zappy had the same problem, sometimes I parked at the top of a hill and started out with a full charge. Going downhill, it would over volt pretty fast. If I went uphill first, even just 1/2 a block, the voltage would never get too high.
Ideally, there would be some kind of dump load to handle regen current when the batteries couldn't take any more. There's not much room on a EX3 for additional circuitry.