EDIT: link below to clarification
http://www.endless-sphere.com/forums/viewtopic.php?f=14&t=70171&p=1059081#p1059081
EDIT: below is *partly* true, but based on a misunderstanding of what the OP wanted to do. The below only works if adding a larger capacity battery of the same voltage as the *entire series string* of smaller capacity batteries, paralleled to the *entire series string*.
It will *not* work to parallel to only *part* of the series string of smaller batteries.
:? I don't understand how paralleling a larger battery with a smaller one is going to cause overdischarge of the smaller one? It's never happened when I've done that, either with SLA + SLA or with NMC + RC LiPo.
Everything in parallel is going to be the same voltage all the time (assuming your wiring is up to the current flows), so as long as all are either the same chemistry or have the same (maybe even just similar) discharge curves and HVC/LVC points, I don't see how a problem would arise.
It might not even matter about the discharge curve, if either pack on it's own can supply the current to run the bike, becuase then whichever one is higher in charge state (presumably lower in Ri) at the time will do that, while the other will supply little of the current untl the first begins to run down.
If you used two packs that have different HVC and LVC points, and simply parallel them while they are at a point on their curve that makes them the same voltage, then *that* could cause a problem once you discharge the pair far enough to pull one of them past it's LV point while the other is still able to continue, assuming neither is protected by a BMS. (and same for charging them)
If you have to use two packs that are very different, but either could run the bike, you'd have to use a switch to toggle between them...but that isnt' teh best way to do things. Directly paralleling two packs that either are the same or have the same HVC/LVC points will make the load on each pack easier and give you better performance (and with SLA, better range).