AFAICR, the Lebowski brain board only supports UVW-ABC halls (the typical type found in most ebike/scooter/etc hubmotors). It is open source, so you could rewrite it to support any position sensor you want, but I have no idea how hard that would be....
The main reasons for UVW-ABC halls not working in typical motors are noted in more detail in other posts around the forum, but include:
--electrical noise induced from the phase wires*
--magnetic noise induced from the stator*
--wrong "spacing" / angle of the sensors relative to the stator teeth or magnets
--too high an ERPM (RPM * pole count etc) so the halls can't switch fast enough *or* the MCU can't read them fast enough
etc.
The first two are usualy less of a problem once phase currents drop but are worst at near-stop when you need them most at high current startups.
Shielding the cabling and/or running hall wires separate from phases for the entire run from inside the motor to inside the controller helps with the first one.
The second one would require building a second magnet ring mounted to the rotor but completely away from the stator and windings, to have the sensors monitor instead of the actual rotor magnets. Has to be properly positioned rotationally relative to the stator, and the magnet ring has to be the same polarities, distances, and number of magnets as the rotor. Basically building an encoder, but UVW-ABC type instead of whatever output the others have--often SIN/COS (which is very precise and much better than UVW-ABC...if your controller supports it).
The first two can also sometimes be helped by increasing the voltage on the signal line, to give a higher signal to noise ratio...but controllers generally only use 5v (some only 3v!) because they go right to the MCU input, no buffering, and the MCU can't tolerate the higher voltage. So you'd have to build a buffer on each signal line (opamp, etc) that can take whatever voltage you wnt on the signal lines from it's pullup, and convert that to something the MCU can tolerate.
The last one...not much to do about that that I can think of.