I've decided to go with this one. I had a small panic attack when the battery didn't want to slide all the way in and the cover was resting on cells instead of box edge, but i cleaned the inside up and it's all good now. I know it all looks like shit, but that's because I was using the original box during almost all operations, so it's dirty in fillers, primers, paint etc. I plan to sand it smoother anyway and then give both parts a good coat of paint.
The cover actually turned out really nice. The haphazard vacuum process reduced bubbling and gave it a nice even peel-ply finish. Unfortunately i didn't a good job of eliminating bridging, which pooled a lot of resin around the perimeter. I used a wood rasp to get most of it removed, but the one particularly bad spot still has remnants of breather and peel ply solidly frozen in there - i think the thickness got to about 8mm there. If there was no bridging, i think it would turn out great. It also held the vacuum overnight, and my oven kept the temperature nice and even. All in all, this time it went yet smoother than previously, even if the results still aren't perfect.
I drilled and mounted the terminals, and discovered my negative side cables are about 10cm too long. Thankfully the cover has more than enough space to coil them up nicely. While attempting that, i managed to snatch a first short and arc crack, when i thought the BMS was disabled. Oh well, lesson learned. I also need longer M10 bolts for internal terminals, as I have a stack of 3 plates for both positive and negative side (negative is 3x6AWG, positive is 8 copper braids into 3 connectors). Overall connectivity of the battery looks to be quite decent cabling-wise, and i have zero doubts about it being able to support the planned 350A - it's the cells I'm most concerned about. Oh, and most likely i won't be able to fit a fuse with the extra cabling and all, so will have to rely on the BMS.
So, the plan for next week - get the cover and main box even, apply some finishing coat, put battery in with some padding foam, seal with silicone, put on the bike. Then i can do a dry motor test and start the work on the new airbox, which will house the controller and the charging connector.